Treatment for a vaginal cyst should be directed by your healthcare provider. Even if it’s a treatment option that you can do at home, it’s best to talk to your provider first. Do not try to drain or squeeze a cyst because this could cause infection. You may want to get rid of a vaginal cyst on your own, but your healthcare provider will decide the best treatment. Some treatments for vaginal cysts may include: A sitz bath: Sit in a bathtub with a few inches of warm water several times a day. This can provide comfort and promote healing. Antibiotics: If your cyst becomes infected, your provider may prescribe antibiotics. Surgical draining: A small tube called a catheter will be inserted into the cyst to drain fluid. These are usually left in place for several weeks. Marsupialization: The cyst is surgically opened and drained. Then, the surgeon will stitch the edges of the cyst wall to form a permanent open pocket or “pouch” for continuous drainage.